License: Creative Commons Attribution 4.0 International license (CC BY 4.0)
When quoting this document, please refer to the following
DOI: 10.4230/LIPIcs.DNA.27.11
URN: urn:nbn:de:0030-drops-146780
URL: http://dagstuhl.sunsite.rwth-aachen.de/volltexte/2021/14678/
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Chen, Tonglin ; Solanki, Arnav ; Riedel, Marc

Parallel Pairwise Operations on Data Stored in DNA: Sorting, Shifting, and Searching

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LIPIcs-DNA-27-11.pdf (1 MB)

Abstract

Prior research has introduced the Single-Instruction-Multiple-Data paradigm for DNA computing (SIMD DNA). It offers the potential for storing information and performing in-memory computations on DNA, with massive parallelism. This paper introduces three new SIMD DNA operations: sorting, shifting, and searching. Each is a fundamental operation in computer science. Our implementations demonstrate the effectiveness of parallel pairwise operations with this new paradigm.

BibTeX - Entry

@InProceedings{chen_et_al:LIPIcs.DNA.27.11,
  author =	{Chen, Tonglin and Solanki, Arnav and Riedel, Marc},
  title =	{{Parallel Pairwise Operations on Data Stored in DNA: Sorting, Shifting, and Searching}},
  booktitle =	{27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
  pages =	{11:1--11:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-205-1},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{205},
  editor =	{Lakin, Matthew R. and \v{S}ulc, Petr},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/opus/volltexte/2021/14678},
  URN =		{urn:nbn:de:0030-drops-146780},
  doi =		{10.4230/LIPIcs.DNA.27.11},
  annote =	{Keywords: Molecular Computing, DNA Computing, DNA Storage, Parallel Computing, Strand Displacement}
}

Keywords: Molecular Computing, DNA Computing, DNA Storage, Parallel Computing, Strand Displacement
Collection: 27th International Conference on DNA Computing and Molecular Programming (DNA 27)
Issue Date: 2021
Date of publication: 08.09.2021

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