| No. | Title | Author | Year |  
| 1 | Finding Maximal Exact Matches in Graphs | Rizzo, Nicola et al. | 2023 | 
| 2 | From Bit-Parallelism to Quantum String Matching for Labelled Graphs | Equi, Massimo et al. | 2023 | 
| 3 | Indexable Elastic Founder Graphs of Minimum Height | Rizzo, Nicola et al. | 2022 | 
| 4 | Algorithms and Complexity on Indexing Elastic Founder Graphs | Equi, Massimo et al. | 2021 | 
| 5 | Chaining with Overlaps Revisited | Mäkinen, Veli et al. | 2020 | 
| 6 | Linear Time Construction of Indexable Founder Block Graphs | Mäkinen, Veli et al. | 2020 | 
| 7 | On the Complexity of String Matching for Graphs | Equi, Massimo et al. | 2019 | 
| 8 | Minimum Segmentation for Pan-genomic Founder Reconstruction in Linear Time | Norri, Tuukka et al. | 2018 | 
| 9 | An In-Memory XQuery/XPath Engine over a Compressed Structured Text Representation | Bonifati, Angela et al. | 2008 | 
| 10 | Storage and Retrieval of Individual Genomes | Mäkinen, Veli et al. | 2008 | 
| 11 | Combinatorial Approaches for Mass Spectra Recalibration | Böcker, Sebastian et al. | 2006 |