WABI 2019 September 8-10, 2019, Niagara Falls, NY, USA

19th International Workshop on Algorithms in Bioinformatics (WABI 2019)



Katharina T. Huber and Dan Gusfield (Eds.)
ISBN 978-3-95977-123-8, LIPICS Vol. 143 ISSN 1868-8969
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Authors
  • Alanko, Jarno
  • Aluru, Srinivas
  • Backofen, Rolf
  • Bannai, Hideo
  • Cao, Zhen
  • Cauer, Alexandra Gesine
  • Cazaux, Bastien
  • Chateau, Annie
  • Chen, Brian Y.
  • Chen, Zhi-Zhong
  • Christensen, Sarah
  • Clement, Nathan L.
  • Dilthey, Alexander
  • Dodd, Kevin F.
  • Edrisi, Mohammadamin
  • Elworth, R. A. Leo
  • Eulenstein, Oliver
  • Gascuel, Olivier
  • Georgiev, Georgi D.
  • Gusfield, Dan
  • Huang, Yuanhao
  • Huber, Katharina T.
  • Jain, Chirag
  • Jansson, Jesper
  • Kingsford, Carl
  • Kolmogorov, Mikhail
  • Liu, Jie
  • Liu, Tian Rui
  • Ma, Cong
  • Mampentzidis, Konstantinos
  • Markin, Alexey
  • Miladi, Milad
  • Molloy, Erin K.
  • Nakhleh, Luay
  • Noble, William Stafford
  • Peterlongo, Pierre
  • Polevikov, Evgeny
  • Qiu, Yutong
  • Raden, Martin
  • Sauerwald, Natalie
  • Shao, Mingfu
  • Shen, Yihang
  • Simonaitis, Pijus
  • Singh, Ritambhara
  • Sivadasan, Naveen
  • Srinivasan, Rajgopal
  • Stoye, Jens
  • Swenson, Krister M.
  • Tiskin, Alexander
  • T. P., Sandhya
  • Treangen, Todd J.
  • Truszkowski, Jakub
  • Vachaspati, Pranjal
  • Vaddadi, Kavya
  • Varoquaux, Nelle
  • Vert, Jean-Philippe
  • Wang, Lusheng
  • Wang, Qi
  • Warnow, Tandy
  • Will, Sebastian
  • Wittler, Roland
  • Xie, Han
  • Xin, Hongyi
  • Yamada, Kohei
  • Yardimci, Gürkan
  • Zafar, Hamim
  • Zehavi, Meirav
  • Zhang, Haowen
  • Zhu, Jiafan
  • Ziv-Ukelson, Michal
  • Zoller, Roni
    		•

    		  
    Front Matter, Table of Contents, Preface, Conference Organization
    Authors: Huber, Katharina T. ; Gusfield, Dan

    Abstract | Document (299 KB) | BibTeX

    Building a Small and Informative Phylogenetic Supertree
    Authors: Jansson, Jesper ; Mampentzidis, Konstantinos ; T. P., Sandhya

    Abstract | Document (575 KB) | BibTeX

    Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs
    Authors: Wittler, Roland

    Abstract | Document (1,039 KB) | BibTeX

    Quantified Uncertainty of Flexible Protein-Protein Docking Algorithms
    Authors: Clement, Nathan L.

    Abstract | Document (1,316 KB) | BibTeX

    TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees
    Authors: Christensen, Sarah ; Molloy, Erin K. ; Vachaspati, Pranjal ; Warnow, Tandy

    Abstract | Document (571 KB) | BibTeX

    Better Practical Algorithms for rSPR Distance and Hybridization Number
    Authors: Yamada, Kohei ; Chen, Zhi-Zhong ; Wang, Lusheng

    Abstract | Document (499 KB) | BibTeX

    pClay: A Precise Parallel Algorithm for Comparing Molecular Surfaces
    Authors: Georgiev, Georgi D. ; Dodd, Kevin F. ; Chen, Brian Y.

    Abstract | Document (5,304 KB) | BibTeX

    Read Mapping on Genome Variation Graphs
    Authors: Vaddadi, Kavya ; Srinivasan, Rajgopal ; Sivadasan, Naveen

    Abstract | Document (571 KB) | BibTeX

    Finding All Maximal Perfect Haplotype Blocks in Linear Time
    Authors: Alanko, Jarno ; Bannai, Hideo ; Cazaux, Bastien ; Peterlongo, Pierre ; Stoye, Jens

    Abstract | Document (434 KB) | BibTeX

    A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation
    Authors: Zoller, Roni ; Zehavi, Meirav ; Ziv-Ukelson, Michal

    Abstract | Document (664 KB) | BibTeX

    Jointly Embedding Multiple Single-Cell Omics Measurements
    Authors: Liu, Jie ; Huang, Yuanhao ; Singh, Ritambhara ; Vert, Jean-Philippe ; Noble, William Stafford

    Abstract | Document (2,931 KB) | BibTeX

    Inferring Diploid 3D Chromatin Structures from Hi-C Data
    Authors: Cauer, Alexandra Gesine ; Yardimci, Gürkan ; Vert, Jean-Philippe ; Varoquaux, Nelle ; Noble, William Stafford

    Abstract | Document (3,789 KB) | BibTeX

    Consensus Clusters in Robinson-Foulds Reticulation Networks
    Authors: Markin, Alexey ; Eulenstein, Oliver

    Abstract | Document (487 KB) | BibTeX

    Weighted Minimum-Length Rearrangement Scenarios
    Authors: Simonaitis, Pijus ; Chateau, Annie ; Swenson, Krister M.

    Abstract | Document (614 KB) | BibTeX

    Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs
    Authors: Miladi, Milad ; Raden, Martin ; Will, Sebastian ; Backofen, Rolf

    Abstract | Document (1,445 KB) | BibTeX

    Context-Aware Seeds for Read Mapping
    Authors: Xin, Hongyi ; Shao, Mingfu ; Kingsford, Carl

    Abstract | Document (1,160 KB) | BibTeX

    Bounded-Length Smith-Waterman Alignment
    Authors: Tiskin, Alexander

    Abstract | Document (441 KB) | BibTeX

    Validating Paired-End Read Alignments in Sequence Graphs
    Authors: Jain, Chirag ; Zhang, Haowen ; Dilthey, Alexander ; Aluru, Srinivas

    Abstract | Document (486 KB) | BibTeX

    Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem
    Authors: Qiu, Yutong ; Ma, Cong ; Xie, Han ; Kingsford, Carl

    Abstract | Document (776 KB) | BibTeX

    Faster Pan-Genome Construction for Efficient Differentiation of Naturally Occurring and Engineered Plasmids with Plaster
    Authors: Wang, Qi ; Elworth, R. A. Leo ; Liu, Tian Rui ; Treangen, Todd J.

    Abstract | Document (1,540 KB) | BibTeX

    Rapidly Computing the Phylogenetic Transfer Index
    Authors: Truszkowski, Jakub ; Gascuel, Olivier ; Swenson, Krister M.

    Abstract | Document (695 KB) | BibTeX

    Empirical Performance of Tree-Based Inference of Phylogenetic Networks
    Authors: Cao, Zhen ; Zhu, Jiafan ; Nakhleh, Luay

    Abstract | Document (1,232 KB) | BibTeX

    A Combinatorial Approach for Single-cell Variant Detection via Phylogenetic Inference
    Authors: Edrisi, Mohammadamin ; Zafar, Hamim ; Nakhleh, Luay

    Abstract | Document (2,079 KB) | BibTeX

    Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation
    Authors: Sauerwald, Natalie ; Shen, Yihang ; Kingsford, Carl

    Abstract | Document (4,177 KB) | BibTeX

    Synteny Paths for Assembly Graphs Comparison
    Authors: Polevikov, Evgeny ; Kolmogorov, Mikhail

    Abstract | Document (675 KB) | BibTeX

    		  



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