WABI 2020 September 7-9, 2020, Pisa, Italy (Virtual Conference)

20th International Workshop on Algorithms in Bioinformatics (WABI 2020)



Carl Kingsford and Nadia Pisanti (Eds.)
ISBN 978-3-95977-161-0, LIPICS Vol. 172 ISSN 1868-8969
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Authors
  • Beerenwinkel, Niko
  • Boucher, Christina
  • Braga, Marília D. V.
  • Buchin, Maike
  • Cantone, Domenico
  • Cazaux, Bastien
  • Chauve, Cedric
  • Chikhi, Rayan
  • Chindelevitch, Leonid
  • Christensen, Sarah
  • Dexter, Nick
  • Drozdova, Polina
  • Dufresne, Yoann
  • El-Kebir, Mohammed
  • Equi, Massimo
  • Faro, Simone
  • Frisby, Trevor S.
  • Ganesh, Arun
  • Gatter, Thomas
  • Gerwert, Klaus
  • Goel, Manish
  • Hartmann, Tom
  • Jahn, Katharina
  • Kingsford, Carl
  • Klau, Gunnar W.
  • Kowalski, Tobias
  • Langmead, Christopher J.
  • Lavenier, Dominique
  • Le, Thien
  • Libbrecht, Maxwell
  • Lin, Yu
  • Ma, Cong
  • Mäkinen, Veli
  • Mallawaarachchi, Vijini G.
  • Marijon, Pierre
  • Martinez, Fábio V.
  • Medvedev, Paul
  • Molloy, Erin K.
  • Mosig, Axel
  • Mukherjee, Kingshuk
  • Norri, Tuukka
  • Pavone, Arianna
  • Pisanti, Nadia
  • Rahman, Amatur
  • Rahmann, Sven
  • Rossi, Massimiliano
  • Rubert, Diego P.
  • Safari, Amir Hosein
  • Salmela, Leena
  • Schneeberger, Korbinian
  • Schrinner, Sven
  • Sedaghat, Nafiseh
  • Selbach, Leonie
  • Spohr, Philipp
  • Stadler, Peter F.
  • Sun, Chen
  • Svetlitsky, Dina
  • Sy, Aaron
  • Tomescu, Alexandru I.
  • von Löhneysen, Sarah
  • Warnow, Tandy
  • Weber, Leah L.
  • Wickramarachchi, Anuradha S.
  • Wulfert, Michael
  • Yu, Xilin
  • Zabeti, Hooman
  • Zehavi, Meirav
  • Zentgraf, Jens
  • Zhang, Louxin
  • Zheng, Hongyu
  • Zimerman, Galia R.
  • Ziv-Ukelson, Michal
    		•

    		  
    Front Matter, Table of Contents, Preface, Conference Organization
    Authors: Kingsford, Carl ; Pisanti, Nadia

    Abstract | Document (283 KB) | BibTeX

    Approximate Search for Known Gene Clusters in New Genomes Using PQ-Trees
    Authors: Zimerman, Galia R. ; Svetlitsky, Dina ; Zehavi, Meirav ; Ziv-Ukelson, Michal

    Abstract | Document (948 KB) | BibTeX

    An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis
    Authors: Zabeti, Hooman ; Dexter, Nick ; Safari, Amir Hosein ; Sedaghat, Nafiseh ; Libbrecht, Maxwell ; Chindelevitch, Leonid

    Abstract | Document (574 KB) | BibTeX

    Natural Family-Free Genomic Distance
    Authors: Rubert, Diego P. ; Martinez, Fábio V. ; Braga, Marília D. V.

    Abstract | Document (936 KB) | BibTeX

    Fast Lightweight Accurate Xenograft Sorting
    Authors: Zentgraf, Jens ; Rahmann, Sven

    Abstract | Document (548 KB) | BibTeX

    Phyolin: Identifying a Linear Perfect Phylogeny in Single-Cell DNA Sequencing Data of Tumors
    Authors: Weber, Leah L. ; El-Kebir, Mohammed

    Abstract | Document (1,115 KB) | BibTeX

    The Longest Run Subsequence Problem
    Authors: Schrinner, Sven ; Goel, Manish ; Wulfert, Michael ; Spohr, Philipp ; Schneeberger, Korbinian ; Klau, Gunnar W.

    Abstract | Document (915 KB) | BibTeX

    Linear Time Construction of Indexable Founder Block Graphs
    Authors: Mäkinen, Veli ; Cazaux, Bastien ; Equi, Massimo ; Norri, Tuukka ; Tomescu, Alexandru I.

    Abstract | Document (744 KB) | BibTeX

    GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
    Authors: Mallawaarachchi, Vijini G. ; Wickramarachchi, Anuradha S. ; Lin, Yu

    Abstract | Document (892 KB) | BibTeX

    Fast and Efficient Rmap Assembly Using the Bi-Labelled de Bruijn Graph
    Authors: Mukherjee, Kingshuk ; Rossi, Massimiliano ; Salmela, Leena ; Boucher, Christina

    Abstract | Document (909 KB) | BibTeX

    Economic Genome Assembly from Low Coverage Illumina and Nanopore Data
    Authors: Gatter, Thomas ; von Löhneysen, Sarah ; Drozdova, Polina ; Hartmann, Tom ; Stadler, Peter F.

    Abstract | Document (3,800 KB) | BibTeX

    A Graph-Theoretic Barcode Ordering Model for Linked-Reads
    Authors: Dufresne, Yoann ; Sun, Chen ; Marijon, Pierre ; Lavenier, Dominique ; Chauve, Cedric ; Chikhi, Rayan

    Abstract | Document (1,820 KB) | BibTeX

    Exact Transcript Quantification Over Splice Graphs
    Authors: Ma, Cong ; Zheng, Hongyu ; Kingsford, Carl

    Abstract | Document (663 KB) | BibTeX

    Shape Decomposition Algorithms for Laser Capture Microdissection
    Authors: Selbach, Leonie ; Kowalski, Tobias ; Gerwert, Klaus ; Buchin, Maike ; Mosig, Axel

    Abstract | Document (1,123 KB) | BibTeX

    The Bourque Distances for Mutation Trees of Cancers
    Authors: Jahn, Katharina ; Beerenwinkel, Niko ; Zhang, Louxin

    Abstract | Document (3,270 KB) | BibTeX

    Advancing Divide-And-Conquer Phylogeny Estimation Using Robinson-Foulds Supertrees
    Authors: Yu, Xilin ; Le, Thien ; Christensen, Sarah ; Molloy, Erin K. ; Warnow, Tandy

    Abstract | Document (686 KB) | BibTeX

    Disk Compression of k-mer Sets
    Authors: Rahman, Amatur ; Chikhi, Rayan ; Medvedev, Paul

    Abstract | Document (1,392 KB) | BibTeX

    Near-Linear Time Edit Distance for Indel Channels
    Authors: Ganesh, Arun ; Sy, Aaron

    Abstract | Document (581 KB) | BibTeX

    Fold Family-Regularized Bayesian Optimization for Directed Protein Evolution
    Authors: Frisby, Trevor S. ; Langmead, Christopher J.

    Abstract | Document (1,093 KB) | BibTeX

    Sequence Searching Allowing for Non-Overlapping Adjacent Unbalanced Translocations
    Authors: Cantone, Domenico ; Faro, Simone ; Pavone, Arianna

    Abstract | Document (669 KB) | BibTeX

    		  



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