WABI 2021 August 2-4, 2021, Virtual Conference

21st International Workshop on Algorithms in Bioinformatics (WABI 2021)



Alessandra Carbone and Mohammed El-Kebir (Eds.)
ISBN 978-3-95977-200-6, LIPICS Vol. 201 ISSN 1868-8969
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Authors
  • Alkan, Can
  • Belazzougui, Djamal
  • Boria, Nicolas
  • Bulteau, Laurent
  • Carbone, Alessandra
  • Chan, Skylar
  • Chitsaz, Hamidreza
  • Dąbkowski, Dawid
  • Ebrahimpour-Boroojeny, Ali
  • El-Kebir, Mohammed
  • Fan, Jason
  • Gagie, Travis
  • Górecki, Paweł
  • Gourdel, Garance
  • Gourvès, Laurent
  • Hach, Faraz
  • Išerić, Hamza
  • Jew, Brandon
  • Kececioglu, John
  • Kitaya, Kazushi
  • Krieger, Spencer
  • Kucherov, Gregory
  • LeMay, Matthew
  • Libeskind-Hadas, Ran
  • Li, Jiajin
  • Lin, Yu
  • Manzini, Giovanni
  • Marchand, Bertrand
  • Mary, Arnaud
  • Mon, Geoffrey
  • Monnot, Jérôme
  • Mumey, Brendan
  • Mykowiecka, Agnieszka
  • Nakagawa, Yoshiki
  • Naseri, Ardalan
  • Numanagić, Ibrahim
  • Ohata, Satsuya
  • Paschos, Vangelis Th.
  • Patro, Rob
  • Ponty, Yann
  • Rajopadhye, Sanjay
  • Raphael, Benjamin J.
  • Rutecka, Natalia
  • Sagot, Marie-France
  • Sankararaman, Sriram
  • Sashittal, Palash
  • Scornavacca, Celine
  • Shibuya, Tetsuo
  • Shibuya, Yoshihiro
  • Shimizu, Kana
  • Sinaimeri, Blerina
  • Sul, Jae Hoon
  • Tomescu, Alexandru I.
  • Wang, Yishu
  • Wawerka, Marcin
  • Weller, Mathias
  • Wickramarachchi, Anuradha
  • Williams, Lucia
  • Wu, Yi-Chieh
  • Yue, William
  • Zaccaria, Simone
  • Zeira, Ron
  • Zhang, Shaojie
  • Zhi, Degui
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    Front Matter, Table of Contents, Preface, Conference Organization
    Authors: Carbone, Alessandra ; El-Kebir, Mohammed

    Abstract | Document (452 KB) | BibTeX

    The Most Parsimonious Reconciliation Problem in the Presence of Incomplete Lineage Sorting and Hybridization Is NP-Hard
    Authors: LeMay, Matthew ; Wu, Yi-Chieh ; Libeskind-Hadas, Ran

    Abstract | Document (767 KB) | BibTeX

    Efficient Privacy-Preserving Variable-Length Substring Match for Genome Sequence
    Authors: Nakagawa, Yoshiki ; Ohata, Satsuya ; Shimizu, Kana

    Abstract | Document (1,164 KB) | BibTeX

    Making Sense of a Cophylogeny Output: Efficient Listing of Representative Reconciliations
    Authors: Wang, Yishu ; Mary, Arnaud ; Sagot, Marie-France ; Sinaimeri, Blerina

    Abstract | Document (880 KB) | BibTeX

    Perplexity: Evaluating Transcript Abundance Estimation in the Absence of Ground Truth
    Authors: Fan, Jason ; Chan, Skylar ; Patro, Rob

    Abstract | Document (2,089 KB) | BibTeX

    The Maximum Duo-Preservation String Mapping Problem with Bounded Alphabet
    Authors: Boria, Nicolas ; Gourvès, Laurent ; Paschos, Vangelis Th. ; Monnot, Jérôme

    Abstract | Document (782 KB) | BibTeX

    Treewidth-Based Algorithms for the Small Parsimony Problem on Networks
    Authors: Scornavacca, Celine ; Weller, Mathias

    Abstract | Document (886 KB) | BibTeX

    Tree Diet: Reducing the Treewidth to Unlock FPT Algorithms in RNA Bioinformatics
    Authors: Marchand, Bertrand ; Ponty, Yann ; Bulteau, Laurent

    Abstract | Document (1,802 KB) | BibTeX

    Space-Efficient Representation of Genomic k-Mer Count Tables
    Authors: Shibuya, Yoshihiro ; Belazzougui, Djamal ; Kucherov, Gregory

    Abstract | Document (849 KB) | BibTeX

    Parsimonious Clone Tree Reconciliation in Cancer
    Authors: Sashittal, Palash ; Zaccaria, Simone ; El-Kebir, Mohammed

    Abstract | Document (1,805 KB) | BibTeX

    An Efficient Linear Mixed Model Framework for Meta-Analytic Association Studies Across Multiple Contexts
    Authors: Jew, Brandon ; Li, Jiajin ; Sankararaman, Sriram ; Sul, Jae Hoon

    Abstract | Document (1,287 KB) | BibTeX

    LRBinner: Binning Long Reads in Metagenomics Datasets
    Authors: Wickramarachchi, Anuradha ; Lin, Yu

    Abstract | Document (1,176 KB) | BibTeX

    Compression of Multiple k-Mer Sets by Iterative SPSS Decomposition
    Authors: Kitaya, Kazushi ; Shibuya, Tetsuo

    Abstract | Document (1,241 KB) | BibTeX

    Compressing and Indexing Aligned Readsets
    Authors: Gagie, Travis ; Gourdel, Garance ; Manzini, Giovanni

    Abstract | Document (932 KB) | BibTeX

    BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy
    Authors: Ebrahimpour-Boroojeny, Ali ; Rajopadhye, Sanjay ; Chitsaz, Hamidreza

    Abstract | Document (1,831 KB) | BibTeX

    BISER: Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies
    Authors: Išerić, Hamza ; Alkan, Can ; Hach, Faraz ; Numanagić, Ibrahim

    Abstract | Document (968 KB) | BibTeX

    Flow Decomposition with Subpath Constraints
    Authors: Williams, Lucia ; Tomescu, Alexandru I. ; Mumey, Brendan

    Abstract | Document (724 KB) | BibTeX

    Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks
    Authors: Wawerka, Marcin ; Dąbkowski, Dawid ; Rutecka, Natalia ; Mykowiecka, Agnieszka ; Górecki, Paweł

    Abstract | Document (1,151 KB) | BibTeX

    Genome Halving and Aliquoting Under the Copy Number Distance
    Authors: Zeira, Ron ; Mon, Geoffrey ; Raphael, Benjamin J.

    Abstract | Document (1,613 KB) | BibTeX

    Efficient Haplotype Block Matching in Bi-Directional PBWT
    Authors: Naseri, Ardalan ; Yue, William ; Zhang, Shaojie ; Zhi, Degui

    Abstract | Document (2,465 KB) | BibTeX

    Fast Approximate Shortest Hyperpaths for Inferring Pathways in Cell Signaling Hypergraphs
    Authors: Krieger, Spencer ; Kececioglu, John

    Abstract | Document (1,163 KB) | BibTeX

    		  



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