WABI 2022 September 5-7, 2022, Potsdam, Germany

22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)



Christina Boucher and Sven Rahmann (Eds.)
ISBN 978-3-95977-243-3, LIPICS Vol. 242 ISSN 1868-8969
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Authors
  • Agret, Clément
  • Alanko, Jarno N.
  • Aluru, Srinivas
  • Baláž, Andrej
  • Belazzougui, Djamal
  • Berkemer, Sarah J.
  • Bernardini, Giulia
  • Bonnet, Konstantinn
  • Boucher, Christina
  • Braga, Marília D. V.
  • Brockmann, Leonie R.
  • Bulteau, Laurent
  • Cazaux, Bastien
  • Chen, Ke
  • Conte, Alessio
  • Doerr¹, Daniel
  • El-Mabrouk, Nadia
  • Gascon, Mathieu
  • Gibney, Daniel
  • Goga, Adrián
  • Grossi, Roberto
  • Guerrini, Veronica
  • Julien, Esther
  • Klerx, Katharina
  • Koslicki, David
  • Kucherov, Gregory
  • Lafond, Manuel
  • Langmead, Ben
  • Limasset, Antoine
  • Lipták, Zsuzsanna
  • Liti, Gianni
  • Liu, Baqiao
  • López Sánchez, Alitzel
  • Marchand, Bertrand
  • Marschall, Tobias
  • Masillo, Francesco
  • Mun, Taher
  • Myers, Gene
  • Ozery, Eden
  • Pibiri, Giulio Ermanno
  • Ponty, Yann
  • Puglisi, Simon J.
  • Rahmann, Sven
  • Raphael, Benjamin J.
  • Rosone, Giovanna
  • Rubert, Diego P.
  • Salmela, Leena
  • Sanaullah, Ahsan
  • Schmidt, Sebastian
  • Shao, Mingfu
  • Shibuya, Yoshihiro
  • Simonaitis, Pijus
  • Stougie, Leen
  • Stoye, Jens
  • Suzuki, Yoshihiko
  • Tattini, Lorenzo
  • Thankachan, Sharma V.
  • Vaddadi, Naga Sai Kavya
  • van Iersel, Leo
  • Warnow, Tandy
  • Wei, Wei
  • Will, Sebastian
  • Zehavi, Meirav
  • Zentgraf, Jens
  • Zhang, Shaoije
  • Zhi, Degui
  • Ziv-Ukelson, Michal
    		•

    		  
    Front Matter, Table of Contents, Preface, Conference Organization
    Authors: Boucher, Christina ; Rahmann, Sven

    Abstract | Document (496 KB) | BibTeX

    Efficient Solutions to Biological Problems Using de Bruijn Graphs (Invited Talk)
    Authors: Salmela, Leena

    Abstract | Document (360 KB) | BibTeX

    Eulertigs: Minimum Plain Text Representation of k-mer Sets Without Repetitions in Linear Time
    Authors: Schmidt, Sebastian ; Alanko, Jarno N.

    Abstract | Document (974 KB) | BibTeX

    Predicting Horizontal Gene Transfers with Perfect Transfer Networks
    Authors: López Sánchez, Alitzel ; Lafond, Manuel

    Abstract | Document (806 KB) | BibTeX

    Haplotype Threading Using the Positional Burrows-Wheeler Transform
    Authors: Sanaullah, Ahsan ; Zhi, Degui ; Zhang, Shaoije

    Abstract | Document (657 KB) | BibTeX

    Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer
    Authors: Gascon, Mathieu ; El-Mabrouk, Nadia

    Abstract | Document (1,003 KB) | BibTeX

    Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination
    Authors: Bonnet, Konstantinn ; Marschall, Tobias ; Doerr¹, Daniel

    Abstract | Document (1,626 KB) | BibTeX

    Automated Design of Dynamic Programming Schemes for RNA Folding with Pseudoknots
    Authors: Marchand, Bertrand ; Will, Sebastian ; Berkemer, Sarah J. ; Bulteau, Laurent ; Ponty, Yann

    Abstract | Document (1,942 KB) | BibTeX

    Fast and Accurate Species Trees from Weighted Internode Distances
    Authors: Liu, Baqiao ; Warnow, Tandy

    Abstract | Document (3,453 KB) | BibTeX

    On Weighted k-mer Dictionaries
    Authors: Pibiri, Giulio Ermanno

    Abstract | Document (944 KB) | BibTeX

    Accurate k-mer Classification Using Read Profiles
    Authors: Suzuki, Yoshihiko ; Myers, Gene

    Abstract | Document (3,310 KB) | BibTeX

    New Algorithms for Structure Informed Genome Rearrangement
    Authors: Ozery, Eden ; Zehavi, Meirav ; Ziv-Ukelson, Michal

    Abstract | Document (1,002 KB) | BibTeX

    Fast Gapped k-mer Counting with Subdivided Multi-Way Bucketed Cuckoo Hash Tables
    Authors: Zentgraf, Jens ; Rahmann, Sven

    Abstract | Document (896 KB) | BibTeX

    A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance
    Authors: Braga, Marília D. V. ; Brockmann, Leonie R. ; Klerx, Katharina ; Stoye, Jens

    Abstract | Document (976 KB) | BibTeX

    Efficient Reconciliation of Genomic Datasets of High Similarity
    Authors: Shibuya, Yoshihiro ; Belazzougui, Djamal ; Kucherov, Gregory

    Abstract | Document (776 KB) | BibTeX

    WGSUniFrac: Applying UniFrac Metric to Whole Genome Shotgun Data
    Authors: Wei, Wei ; Koslicki, David

    Abstract | Document (1,653 KB) | BibTeX

    Reconstructing Phylogenetic Networks via Cherry Picking and Machine Learning
    Authors: Bernardini, Giulia ; van Iersel, Leo ; Julien, Esther ; Stougie, Leen

    Abstract | Document (1,301 KB) | BibTeX

    Feasibility of Flow Decomposition with Subpath Constraints in Linear Time
    Authors: Gibney, Daniel ; Thankachan, Sharma V. ; Aluru, Srinivas

    Abstract | Document (1,294 KB) | BibTeX

    Prefix-Free Parsing for Building Large Tunnelled Wheeler Graphs
    Authors: Goga, Adrián ; Baláž, Andrej

    Abstract | Document (688 KB) | BibTeX

    Pangenomic Genotyping with the Marker Array
    Authors: Mun, Taher ; Vaddadi, Naga Sai Kavya ; Langmead, Ben

    Abstract | Document (909 KB) | BibTeX

    Suffix Sorting via Matching Statistics
    Authors: Lipták, Zsuzsanna ; Masillo, Francesco ; Puglisi, Simon J.

    Abstract | Document (992 KB) | BibTeX

    A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements
    Authors: Simonaitis, Pijus ; Raphael, Benjamin J.

    Abstract | Document (994 KB) | BibTeX

    Locality-Sensitive Bucketing Functions for the Edit Distance
    Authors: Chen, Ke ; Shao, Mingfu

    Abstract | Document (811 KB) | BibTeX

    phyBWT: Alignment-Free Phylogeny via eBWT Positional Clustering
    Authors: Guerrini, Veronica ; Conte, Alessio ; Grossi, Roberto ; Liti, Gianni ; Rosone, Giovanna ; Tattini, Lorenzo

    Abstract | Document (2,024 KB) | BibTeX

    Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes
    Authors: Rubert, Diego P. ; Braga, Marília D. V.

    Abstract | Document (1,337 KB) | BibTeX

    Toward Optimal Fingerprint Indexing for Large Scale Genomics
    Authors: Agret, Clément ; Cazaux, Bastien ; Limasset, Antoine

    Abstract | Document (1,306 KB) | BibTeX

    		  



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